Izvestiya of Saratov University.

Physics

ISSN 1817-3020 (Print)
ISSN 2542-193X (Online)

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Plastun I. L., Naumov A. A., Zhulidin P. A., Filin P. D. Spectral manifestations of amino acids from immunoglobulin and tumor necrosis factor composition intermolecular interaction and effect of cyanine 7 on this interaction. Izvestiya of Saratov University. Physics , 2022, vol. 22, iss. 1, pp. 46-61. DOI: 10.18500/1817-3020-2022-22-1-46-61, EDN: CYOHDO

This is an open access article distributed under the terms of Creative Commons Attribution 4.0 International License (CC-BY 4.0).
Published online: 
31.03.2022
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Language: 
Russian
Heading: 
Optics and spectroscopy. Laser physics
Article type: 
Article
UDC: 
539.194:539.196.3:544.174.3
DOI: 
10.18500/1817-3020-2022-22-1-46-61
EDN: 
CYOHDO

Spectral manifestations of amino acids from immunoglobulin and tumor necrosis factor composition intermolecular interaction and effect of cyanine 7 on this interaction

Autors: 
Plastun Inna L'vovna, Yuri Gagarin State Technical University of Saratov
Naumov Anatoly A., Yuri Gagarin State Technical University of Saratov
Zhulidin Pavel Andreevich, Yuri Gagarin State Technical University of Saratov
Filin Pavel Dmitrievich, Yuri Gagarin State Technical University of Saratov
Abstract: 

Immunoglobulin and tumor necrosis factor complex formation, which is the basis of immunosuppressive drug etanercept therapeutic action, has been studied using quantum chemical modeling and molecular dynamics. The effect on the possibility of cyanine 7 on hydrogen bonds formation between amino acids from tumor necrosis factor and immunoglobulin has been considered. Analysis of dye effect on tumor necrosis factor and immunoglobulin complexation is caused by need for its use as a fluorescent label of etanercept when studying this drug passing through vessels and tissues of body in vivo. Computer simulation was based on molecular structures and IR spectra calculation using the density functional theory methods, followed by an analysis of formed hydrogen bonds parameters, as well as on the study of tumor necrosis factor protein structure dynamics. It has been found that cyanine 7 has a weak effect on amino acids complexation and, therefore, does not lead to therapeutic effect decrease, which makes it possible to use cyanine 7 for labeling etanercept. 

Key words: 
IR spectrum
amino acids
immunoglobulin
tumor necrosisfactor
cyanine 7
molecularmodeling
hydrogen bonds
densityfunctional theory
molecular dynamics
Acknowledgments: 
Authors express their gratitude to the senior researcher of the Laboratory for Theranostics Remotely Controlled Systems in Educational and Scientific Institute of Nanostructures and Biosystems of Saratov State University PhD in chemistry Oksana A. Mayorova and the researcher of the Center for Neurobiology and Neurorehabilitation of the Autonomous non-profit educational organization of higher professional education “Skolkovo Institute of Science and Technology” PhD in biology Olga A. Sindeeva for proposing an interesting and promising task of great practical importance for medicine and biophysics. The reported study was funded by RFBR according to the research project No. № 20-33-90250.
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Received: 
30.12.2021
Accepted: 
04.02.2022
Published: 
31.03.2022
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