Izvestiya of Saratov University.


ISSN 1817-3020 (Print)
ISSN 2542-193X (Online)

For citation:

Grigoriev A. V., Manturov A. O. Kinetics of Diffusion-limited Elongation of DNA Fragments. Izvestiya of Sarat. Univ. Physics. , 2014, vol. 14, iss. 2, pp. 57-59. DOI: 10.18500/1817-3020-2014-14-2-57-59

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Kinetics of Diffusion-limited Elongation of DNA Fragments

Grigoriev Anton Vladimirovich, Saratov State University
Manturov Alexey Olegovich, Saratov State University

The numerical model of the elongation kinetics of the single-stranded DNA has been proposed and studied. The proposed model is based on the principles of the phenomenological modelling and implemented as diffusion cellular automata. The analytical and numerical estimates of the elongation reaction rate for different concentrations of nucleotides has been obtained. The possibility of nucleotide binding delays with reducing the concentration of one of the nucleotides in the solution is shown. 

  1. Brooker R. J. Genetics : Analysis and Principles / 4th ed. McGraw-Hill, 2012. 868 p
  2. Bai L., Shundrovsky A., Wang M. D. Sequence-dependent Kinetic Model for Transcription Elongation by RNA Polymerase // J. of Molecular Biology. 2004. Vol. 344. P. 335–349.
  3. Марголус Н., Тоффоли Т. Машины клеточных автоматов / пер. с англ. М. : Мир, 1991. 280 с.